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Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 57760: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION

Last Modified: Barbara Shields, 01/23/2012 5:03 PM   
Basics

Project Number:
2009-005-00
Title:
Influence of Environment and Landscape on Salmonid Genetics
BPA PM:
Martin Allen
Stage:
Closed
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
57760
Contract Title:
2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Continuation:
Previous: Next:
53211: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
  • 61839: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Status:
History
Contract Description:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids.  This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives:

1) Landscape Genetics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook salmon and steelhead populations.

2) Expression of Traits - test for association of SNPs and gene expression results with traits of interest (i.e., smoltification, thermal tolerance, disease resistance, run timing) that are related to recovery of steelhead populations.  Evaluate candidate genes in a broad range of populations to quantify adaptive variation and local adaptation.
Account Type(s):
Expense
Contract Start Date:
07/01/2012
Contract End Date:
06/30/2013
Current Contract Value:
$159,802
Expenditures:
$159,802

* Expenditures data includes accruals and are based on data through 31-Mar-2024.

BPA CO:
Kristi Van Leuven (Inactive)
BPA COR:
Barbara Shields (Inactive)
Env. Compliance Lead:
Israel Duran
Contract Contractor:
Columbia River Inter-Tribal Fish Commission (CRITFC) - COLURIVE00
Work Order Task(s):
WO: 00226829, Task: 1
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
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Contract Contacts

Full Name Organization Write Permission Contact Role Email Work Phone
Stephanie Breeden Bonneville Power Administration No Interested Party sfbreeden@bpa.gov (503) 230-5192
Nate Campbell Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Interested Party camn@critfc.org (208) 837-9096x1128
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Christine Golightly Columbia River Inter-Tribal Fish Commission (CRITFC) No Administrative Contact golc@critfc.org (503) 731-1288
Douglas Hatch Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Technical Contact hatd@critfc.org (503) 731-1263
Paul Krueger Bonneville Power Administration Yes F&W Approver pqkrueger@bpa.gov (503) 230-5723
Andrew Matala Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Interested Party mata@critfc.org (208) 837-9096x1111
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) Yes Contract Manager nars@critfc.org (208) 837-9096x1120
Phillip Roger Columbia River Inter-Tribal Fish Commission (CRITFC) No Supervisor rogp@critfc.org (503) 731-1301
Barbara Shields Bonneville Power Administration Yes COR bashields@bpa.gov (503) 230-4748
Kristi Van Leuven Bonneville Power Administration Yes Contracting Officer kjvleuven@bpa.gov (503) 230-3605


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Statement Of Work (SOW)

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Deliverables (Active/Complete)

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Funding Package - Submit draft to COTR B: 119. Obj. 1 & 2) Project Management 07/08/2012 07/01/2012
Environmental Compliance C: 165. Obj. 1 & 2) EC 07/01/2012 07/01/2012
Manuscript D: 183. Obj. 1 & 2) Publications 06/25/2013 05/31/2013
List of Landscape and Genetic Variables E: 156. Obj. 1) Determine Landscape and Genetic Variables 03/30/2013 03/30/2013
Genotypes and Environmental/Landscape Data collected F: 157. Obj. 1) Gather Landscape and Genetic Data 04/01/2013 03/30/2013
Statistical Analyses G: 162. Obj. 1) Landscape Genetics Analyses/Correlation 04/30/2013 01/31/2013
Report Results H: 161. Obj. 1) Distribute Results 06/15/2013 06/13/2013
Plan for analysis I: 156. Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 01/31/2013 01/31/2013
Inventory Tissue Samples J: 157. Obj. 2) Tissue Sampling 04/06/2013 03/30/2013
Allele Frequencies and Gene expression K: 157. Obj. 2) Quantify Gene Expression & SNP Frequencies 05/31/2013 06/13/2013
Analyzed Data: Association of SNPs and Gene Expression L: 162. Obj. 2) Genes Associated with Traits 05/31/2013 05/31/2013
Report Results M: 161. Obj. 2) Distribute Results 06/29/2013 06/13/2013
Attach Progress Report in Pisces N: 132. Obj. 1 & 2) Submit Progress Report for the period (July 2012) to (June 2013) 06/30/2013 06/29/2013

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Metrics

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Viewing of Environmental Metrics Customize

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Focal Species

Primary Focal Species Work Statement Elements
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Trout, Interior Redband (O. mykiss gairdnerii)
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

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Environmental Compliance

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2012
B 119 Obj. 1 & 2) Project Management 07/01/2012
C 165 Obj. 1 & 2) EC 07/01/2012
D 183 Obj. 1 & 2) Publications 07/01/2012
E 156 Obj. 1) Determine Landscape and Genetic Variables 07/01/2012
F 157 Obj. 1) Gather Landscape and Genetic Data 07/01/2012
G 162 Obj. 1) Landscape Genetics Analyses/Correlation 07/01/2012
H 161 Obj. 1) Distribute Results 07/01/2012
I 156 Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 07/01/2012
J 157 Obj. 2) Tissue Sampling 07/01/2012
K 157 Obj. 2) Quantify Gene Expression & SNP Frequencies 07/01/2012
L 162 Obj. 2) Genes Associated with Traits 07/01/2012
M 161 Obj. 2) Distribute Results 07/01/2012
N 132 Obj. 1 & 2) Submit Progress Report for the period (July 2012) to (June 2013) 07/01/2012

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Reports


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