Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 77704: 2008-504-00 EXP STURGEON GENETICS
Project Number:
Title:
Sturgeon Genetics
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Mainstem - 100.00%
Contract Number:
77704
Contract Title:
2008-504-00 EXP STURGEON GENETICS
Contract Continuation:
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74782: 2008-504-00 EXP STURGEON GENETICS
Contract Status:
Closed
Contract Description:
This proposal outlines a project from the Fish & Wildlife Program Accords that addresses the use of genetic markers to evaluate population structure of white sturgeon in the lower Columbia River and upstream of Bonneville Dam.  The specific objectives are to 1) evaluate population differentiation and migration (gene flow) among reservoirs, 2) determine relatedness, mean productivity, and number of spawners within each reservoir, and 3) characterize broodstock including identifying origins (reservoir or population) and degree of relatedness among candidate broodstock fish for use in a potential  restoration and enhancement facility.  These three objectives address needs for determining genetic diversity, relative broodstock abundance, distribution and movement, and supplementation efforts.  A panel of microsatellite (uSAT) loci have been compiled and optimized with a locus scoring protocol adopted from researchers at the University of California at Davis (UCD; Andrea Drauch pers. comm.) for collection of standardized multilocus genotypic data.  The protocol provides the opportunity for future collaboration and complementary efforts among interested research groups.  Beginning with the currently proposed long-term monitoring effort, establishing a data repository will allow implementation of future pedigree studies for monitoring survival of hatchery releases, and ultimately for estimating natural reproductive success of both wild and released hatchery reared sturgeon.  The work related to these objectives will be completed by CRITFC and University of Idaho (UI) staff at the Hagerman Fish Culture Experiment Station.  Tissue samples will be collected by staff from CRITFC, WDFW, and ODFW.  Genotyping and genetic analysis will be completed by CRITFC and UI staff in Hagerman, ID.  Geneticists with CRITFC have adequate expertise to complete each objective as evidenced in published peer-reviewed papers (e.g. Matala et al. 2008, Narum et al. 2007, Narum et al. 2008).

For FY18, NPCC has approved a specific task to develop and analyze a genetic marker for sex determination in white sturgeon. This is reflected in WE D.
Account Type(s):
Expense
Contract Start Date:
11/01/2017
Contract End Date:
10/31/2018
Current Contract Value:
$172,614
Expenditures:
$172,614

* Expenditures data includes accruals and are based on data through 31-Mar-2024.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Complete environmental compliance B: 165. Complete Environmental Compliance Requirements 03/15/2018 03/15/2018
Project Management C: 119. Project Management 09/30/2018 09/30/2018
Optimize SNPs and expand on SNP panel development D: 156. Expand SNP panel development 03/15/2018 03/15/2018
Compilation of a genetic data baseline for analysis, and allele score conversion. E: 157. Collection, transformation and management of (polyploid) genetic data 03/15/2018 03/15/2018
Create and manage a genetic data baseline of standardized genotypes. F: 159. Population structure and parentage database 03/15/2018 03/15/2018
Analysis of allele frequencies among reservoir-specific collections of white sturgeon. G: 162. Analysis of SNP Frequencies 03/15/2018 03/15/2018
Results of white sturgeon genetic structure among reservoirs. H: 161. Annual results of population genetic structure and productivity. 03/15/2018 03/15/2018
Produce annual progress report I: 132. Submit Progress Report for the period (11/1/2016) to (10/31/17) 03/15/2018 03/15/2018

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Sturgeon, White (A. transmontanus) - Lower Columbia River
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 10/01/2017
B 165 Complete Environmental Compliance Requirements 10/01/2017
C 119 Project Management 10/01/2017
D 156 Expand SNP panel development 10/01/2017
E 157 Collection, transformation and management of (polyploid) genetic data 10/01/2017
F 159 Population structure and parentage database 10/01/2017
G 162 Analysis of SNP Frequencies 10/01/2017
H 161 Annual results of population genetic structure and productivity. 10/01/2017
I 132 Submit Progress Report for the period (11/1/2016) to (10/31/17) 10/01/2017