Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 90544: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Steelhead & Chinook Salmon
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
90544
Contract Title:
2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Continuation:
Previous: Next:
88216: 2010-031-00 EXP IDFG EXP SNAKE RIVER CHINOOK AND STEELHEAD
  • 84045 REL 14: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Status:
Closed
Contract Description:
In 2010, Idaho Department of Fish and Game in collaboration with the Columbia River Inter-Tribal Fish Commission, initiated two BPA-funded projects (2010-026-00 and 2010-031-00) to test and implement genetic monitoring programs for Snake River basin Chinook Salmon and steelhead utilizing two genetic technologies. The first technology is called Parentage-based tagging (PBT) and involves the annual sampling and genotyping of all hatchery broodstock, creating a genetic baseline of candidate parents.  The genotyping of broodstock permanently genetically “tags” all of their offspring. A non-lethal tissue sample from any of these offspring can be genotyped and analyses can be completed to assign parentage, thereby identifying hatchery of origin and age. The second technology is called Genetic Stock Identification (GSI), and involves creating a reference genetic baseline from all contributing wild stocks.  Wild fish of unknown origin can then be sampled and genotyped, with a genetic assignment test used to identify their stock of origin.  Over the last decade, these projects have demonstrated the accuracy, efficiency, and utility of these technologies for monitoring both wild and hatchery stocks throughout the Snake River and Columbia River basins.  For hatchery stocks, PBT addresses Fish and Wildlife Program objectives that involve marking hatchery stocks, conducting hatchery evaluations and reform, and enforcing salmonid fishery management measures.  For wild stocks, GSI provides unprecedented tools for monitoring wild stock abundance, productivity and genetic diversity, which are required for NOAA ESA status assessments. These two projects were combined by BPA in 2021, with ongoing goals of keeping PBT and GSI baselines up-to-date in the Snake River basin, to maintain and enhance SNP genetic marker panels, and to continue projects that use these PBT and GSI baselines to address conservation and management issues of importance to the Council and state, tribal and federal fisheries managers.
Account Type(s):
Expense
Contract Start Date:
07/01/2022
Contract End Date:
06/30/2023
Current Contract Value:
$1,748,713
Expenditures:
$1,748,713

* Expenditures data includes accruals and are based on data through 31-Mar-2024.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Environmental Complicance Documentation A: 165. Environmental Compliance Documentation 07/03/2022 07/03/2022
Effective implementation management and timely contract administration B: 119. Obj. 1-8, Manage/Administer Projects 06/30/2023 06/23/2023
Completed Annual Report D: 132. Obj. 1-8, Submit Progress Report for the period (1/1/2022) to (12/31/2022) 05/31/2023 05/31/2023
See the Deliverable Specification above E: 189. 1: Evaluate and maintain SNPS 06/30/2023 06/23/2023
Genetic marker discovery F: 157. OBJ 1: Evaluate and maintain SNPS 06/30/2023 06/23/2023
Genetic marker data to database G: 161. OBJ 1: Evaluate and maintain SNPs 06/30/2023 06/23/2023
Genetic marker data to database H: 156. OBJ 2: GSI Baseline maintenance and expansion 06/30/2023 06/23/2023
Analyzed genetic data I: 162. OBJ 2: GSI Baseline maintenance and expansion 06/30/2023 06/23/2023
Genotypes and allele frequencies for baseline populations J: 161. OBJ 2: GSI Baseline maintenance and expansion 06/30/2023 06/23/2023
Genotypes to regional database (FishGen) K: 159. OBJ 2: GSI Baseline maintenance and expansion 06/30/2023 06/23/2023
OBJ 3: PBT Baseline maintenance L: 189. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
All samples inventoried M: 157. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Sample inventory N: 157. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Report/Present Genetic Data O: 161. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Standardized parental genotypes P: 157. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Parentage and PNI results Q: 161. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Deliverable: An accessible, error-checked data set with metadata R: 162. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Baseline genotypes to database S: 159. OBJ 3: PBT Baseline maintenance 06/30/2023 06/23/2023
Adult and juvenile sampling T: 156. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
Sample inventory U: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
Produce accessible, error-checked datasets V: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
OBJ 4. Lower Granite Dam wild and hatchery stock monitoring W: 159. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
Deliverable: An accessible, error-checked data set with metadata X: 162. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
OBJ 4. Lower Granite Dam wild and hatchery stock monitoring Y: 161. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2023 06/23/2023
OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries Z: 156. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
Inventoried genetic samples AA: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
Genotyping AB: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
Transfer Genotypes to Regional Genetic Data Repository: Final genotypes will be transferred to www.FishGen.net AC: 159. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
GSI and PBT assignments: AD: 162. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
Stock composition estimates AE: 161. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2023 06/23/2023
Develop RM&E Methods and Designs (integrated evaluations) AF: 156. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
Conduct and assist with adult, carcass and juvenile sampling AG: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
Sample inventory AH: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
Produce accessible, error-checked datasets AI: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
Deliverable: An accessible, error-checked data set with metadata AJ: 162. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
Parentage results and reproductive success AK: 161. OBJ 6: Integrated Hatchery Monitoring 06/30/2023 06/23/2023
RM&E Methods and Designs AL: 156. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2023 06/23/2023
Genotype data will be analyzed AM: 162. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2023 06/23/2023
Estimate genetic diversity and life history characteristics AN: 161. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2023 06/23/2023
List of primers to order to build new genetic panel for Grandparentage work AO: 156. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 01/06/2023 01/06/2023
Sample Genotyping AP: 157. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/30/2023 06/23/2023

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 11 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 7 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 5 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 165 Environmental Compliance Documentation
B 119 Obj. 1-8, Manage/Administer Projects
C 185 Periodic Status Reports for BPA
D 132 Obj. 1-8, Submit Progress Report for the period (1/1/2022) to (12/31/2022)
E 189 1: Evaluate and maintain SNPS
F 157 OBJ 1: Evaluate and maintain SNPS 07/01/2022
G 161 OBJ 1: Evaluate and maintain SNPs
H 156 OBJ 2: GSI Baseline maintenance and expansion 07/01/2022
I 162 OBJ 2: GSI Baseline maintenance and expansion
J 161 OBJ 2: GSI Baseline maintenance and expansion
K 159 OBJ 2: GSI Baseline maintenance and expansion
L 189 OBJ 3: PBT Baseline maintenance
M 157 OBJ 3: PBT Baseline maintenance 07/01/2022
N 157 OBJ 3: PBT Baseline maintenance 07/01/2022
O 161 OBJ 3: PBT Baseline maintenance
P 157 OBJ 3: PBT Baseline maintenance 07/01/2022
Q 161 OBJ 3: PBT Baseline maintenance
R 162 OBJ 3: PBT Baseline maintenance
S 159 OBJ 3: PBT Baseline maintenance
T 156 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2022
U 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2022
V 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2022
W 159 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
X 162 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Y 161 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Z 156 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2022
AA 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2022
AB 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2022
AC 159 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AD 162 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AE 161 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AF 156 OBJ 6: Integrated Hatchery Monitoring 07/01/2022
AG 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2022
AH 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2022
AI 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2022
AJ 162 OBJ 6: Integrated Hatchery Monitoring
AK 161 OBJ 6: Integrated Hatchery Monitoring
AL 156 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 07/01/2022
AM 162 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AN 161 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AO 156 OBJ 8. Developing Grandparentage Technology in the Snake River Basin 07/01/2022
AP 157 OBJ 8. Developing Grandparentage Technology in the Snake River Basin 07/01/2022