Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 84045 REL 40: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Steelhead & Chinook Salmon
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
84045 REL 40
Contract Title:
2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Continuation:
Previous: Next:
84045 REL 30: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD RM&E
  • CR-379671: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Status:
Issued
Contract Description:
In 2010, Idaho Department of Fish and Game in collaboration with the Columbia River Inter-Tribal Fish Commission, initiated two BPA-funded projects (2010-026-00 and 2010-031-00) to test and implement genetic monitoring programs for Snake River basin Chinook Salmon and steelhead utilizing two genetic technologies. The first technology is called Parentage-based tagging (PBT) and involves the annual sampling and genotyping of all hatchery broodstock, creating a genetic baseline of candidate parents.  The genotyping of broodstock permanently genetically “tags” all of their offspring. A non-lethal tissue sample from any of these offspring can be genotyped and analyses can be completed to assign parentage, thereby identifying hatchery of origin and age. The second technology is called Genetic Stock Identification (GSI), and involves creating a reference genetic baseline from all contributing wild stocks.  Wild fish of unknown origin can then be sampled and genotyped, with a genetic assignment test used to identify their stock of origin.  Over the last decade, these projects have demonstrated the accuracy, efficiency, and utility of these technologies for monitoring both wild and hatchery stocks throughout the Snake River and Columbia River basins.  For hatchery stocks, PBT addresses Fish and Wildlife Program objectives that involve marking hatchery stocks, conducting hatchery evaluations and reform, and enforcing salmonid fishery management measures.  For wild stocks, GSI provides unprecedented tools for monitoring wild stock abundance, productivity and genetic diversity, which are required for NOAA ESA status assessments. These two projects were combined by BPA in 2021, with ongoing goals of keeping PBT and GSI baselines up-to-date in the Snake River basin, to maintain and enhance SNP genetic marker panels, and to continue projects that use these PBT and GSI baselines to address conservation and management issues of importance to the Council and state, tribal and federal fisheries managers.
Account Type(s):
Expense
Contract Start Date:
07/01/2025
Contract End Date:
06/30/2026
Current Contract Value:
$1,905,840
Expenditures:
$333,182

* Expenditures data includes accruals and are based on data through 31-Oct-2025.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Accrual Category:
RM&E
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Concluded
Document that all samples collected under other projects/permits B: 165. Environmental Compliance Documentation 07/03/2025 07/03/2025
Effective implementation management and timely contract administration C: 119. Obj. 1-8, Manage/Administer Projects 06/30/2026
Completed Progress (Annual) Report D: 132. Obj. 1-8, Submit Progress Report for the period (1/1/2025) to (12/31/2025) 05/31/2026
Complete Coordination E: 189. OBJ 1: Evaluate and maintain SNPS 06/30/2026
Produce accessible, error-checked datasets F: 157. OBJ 1: Evaluate and maintain SNPS 06/28/2026
Genetic marker information will be made available on www.fishgen.net. G: 161. OBJ 1: Evaluate and maintain SNPs 06/28/2026
New GSI methods investigated H: 156. OBJ 2: GSI Baseline maintenance and expansion 06/28/2026
Analyses completed I: 162. OBJ 2: GSI Baseline maintenance and expansion 06/28/2026
Genotypes and allele frequencies for baseline populations completed J: 161. OBJ 2: GSI Baseline maintenance and expansion 06/28/2026
Transfer standardized data K: 159. OBJ 2: GSI Baseline maintenance and expansion 06/28/2026
Sampling Coordination among agencies L: 189. OBJ 3: PBT Baseline maintenance 06/28/2026
Produce accessible, error-checked datasets M: 157. OBJ 3: PBT Baseline maintenance 06/28/2026
Produce accessible, error-checked datasets N: 157. OBJ 3: PBT Baseline maintenance 06/28/2026
Summarized broodstock numbers and sampling information O: 161. OBJ 3: PBT Baseline maintenance 06/28/2026
Produce accessible, error-checked datasets P: 157. OBJ 3: PBT Baseline maintenance 06/28/2026
Parentage and PNI results made available Q: 161. OBJ 3: PBT Baseline maintenance 06/28/2026
Completed analyses R: 162. Baseline maintenance 06/28/2026
Completed baselines housed on the FishGen data repository. S: 159. OBJ 3: PBT Baseline maintenance 06/28/2026
Sampling plan completed T: 156. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
Produce accessible, error-checked datasets U: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
Produce accessible, error-checked datasets V: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
Stored data W: 159. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
An accessible, error-checked data set with metadata X: 162. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
Stock composition estimates Y: 161. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/28/2026
Produce accessible, error-checked datasets Z: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2026
Produce accessible, error-checked datasets AA: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2026
Data stored AB: 159. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2026
Deliverable: An accessible, error-checked data set with metadata AC: 162. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2026
Stock composition estimates completed AD: 161. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/28/2026
RM&E Methods and Designs Developed AE: 156. OBJ 6: Integrated Hatchery Monitoring 06/30/2026
Produce accessible, error-checked datasets AF: 157. OBJ 6: Integrated Hatchery Monitoring 06/28/2026
Produce accessible, error-checked datasets AG: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2026
Produce accessible, error-checked datasets AH: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2026
Deliverable: An accessible, error-checked data set with metadata AI: 162. OBJ 6: Integrated Hatchery Monitoring 06/30/2026
Parentage results and reproductive success AJ: 161. OBJ 6: Integrated Hatchery Monitoring 06/30/2026
Methods and Designs AK: 156. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2026
Deliverable: An accessible, error-checked data set with metadata AL: 162. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2026
Genotype data analyzed AM: 161. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2026
Deliverable: An accessible, error-checked data set with metadata AN: 162. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/30/2026
False-negative and false-positive rates reported AO: 161. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/28/2026

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 2 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 10 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 8 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 5 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 6 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA
B 165 Environmental Compliance Documentation
C 119 Obj. 1-8, Manage/Administer Projects
D 132 Obj. 1-8, Submit Progress Report for the period (1/1/2025) to (12/31/2025)
E 189 OBJ 1: Evaluate and maintain SNPS
F 157 OBJ 1: Evaluate and maintain SNPS 07/01/2025
G 161 OBJ 1: Evaluate and maintain SNPs
H 156 OBJ 2: GSI Baseline maintenance and expansion 07/01/2025
I 162 OBJ 2: GSI Baseline maintenance and expansion
J 161 OBJ 2: GSI Baseline maintenance and expansion
K 159 OBJ 2: GSI Baseline maintenance and expansion
L 189 OBJ 3: PBT Baseline maintenance
M 157 OBJ 3: PBT Baseline maintenance 07/01/2025
N 157 OBJ 3: PBT Baseline maintenance 07/01/2025
O 161 OBJ 3: PBT Baseline maintenance
P 157 OBJ 3: PBT Baseline maintenance 07/01/2025
Q 161 OBJ 3: PBT Baseline maintenance
R 162 Baseline maintenance
S 159 OBJ 3: PBT Baseline maintenance
T 156 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2025
U 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2025
V 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2025
W 159 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
X 162 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Y 161 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Z 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2025
AA 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2025
AB 159 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AC 162 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AD 161 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AE 156 OBJ 6: Integrated Hatchery Monitoring 07/01/2025
AF 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2025
AG 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2025
AH 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2025
AI 162 OBJ 6: Integrated Hatchery Monitoring
AJ 161 OBJ 6: Integrated Hatchery Monitoring
AK 156 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 07/01/2025
AL 162 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AM 161 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AN 162 OBJ 8. Developing Grandparentage Technology in the Snake River Basin
AO 161 OBJ 8. Developing Grandparentage Technology in the Snake River Basin