Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 85312: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Salmon and Steelhead stocks
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
85312
Contract Title:
2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Continuation:
Previous: Next:
82618: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
  • 88216: 2010-031-00 EXP IDFG EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Status:
Closed
Contract Description:
Since 2010, this project has implemented a genetic technology for tagging hatchery steelhead and Chinook salmon in the Snake River basin, referred to as Parentage Based Tagging (PBT).  PBT provides a powerful tool to meet Fish & Wildlife Program objectives associated with tagging hatchery stocks, evaluating integrated and segregated hatchery programs, and enforcing salmonid fishery management measures. This project genotypes approximately 20,000  samples annually to create PBT parental genetic baselines for hatchery steelhead and Chinook salmon in the Snake River basin.  This includes ~1,500 Fall Chinook salmon from the Lyons Ferry Fish hatchery. In doing so, it effectively, permanently genetically marks ~12 million smolts, per species, per year. This project works closely with an existing BPA funded project (2008-907-00) to ensure that genetic marker sets used in the Columbia River basin are standardized, providing unprecedented genetic tools for managing wild and hatchery stocks in the basin: with Genetic Stock Identification techniques segregating adult wild runs by stock of origin, and Parentage Based Tagging technologies identifying the stock and age of sampled hatchery fish. Importantly, a significant portion of hatchery adults that return to the Columbia River Basin each year are unmarked/untagged using conventional tagging methods (e.g. adipose clips, CWT, PIT).  Implementation of sampling and genotyping programs at Bonneville and Lower Granite Dams allow the identification of these unmarked/untagged hatchery fish and significantly improve estimates of wild escapement.
Account Type(s):
Expense
Contract Start Date:
07/01/2020
Contract End Date:
06/30/2021
Current Contract Value:
$1,013,961
Expenditures:
$1,013,961

* Expenditures data includes accruals and are based on data through 31-Aug-2022.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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Full Name Organization Write Permission Contact Role Email Work Phone
Daniel Affonso Bonneville Power Administration Yes Contracting Officer dxaffonso@bpa.gov (503) 230-3893
Martin Allen Bonneville Power Administration Yes COTR mballen@bpa.gov (503) 230-5115
Matthew Campbell Idaho Department of Fish and Game (IDFG) Yes Contract Manager matthew.campbell@idfg.idaho.gov (208) 939-6713
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Kristen Jule Bonneville Power Administration Yes F&W Approver krjule@bpa.gov (503) 230-3588
Paul Kline Idaho Department of Fish and Game (IDFG) No Interested Party paul.kline@idfg.idaho.gov (208) 287-2788
Christine Kozfkay Idaho Department of Fish and Game (IDFG) No Supervisor christine.kozfkay@idfg.idaho.gov (208) 287-2789
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) No Interested Party nars@critfc.org (208) 837-9096x1120
William Schrader Idaho Department of Fish and Game (IDFG) No Interested Party bill.schrader@idfg.idaho.gov (208) 465-8404x235
Susan Smith Idaho Department of Fish and Game (IDFG) No Administrative Contact susan.smith@idfg.idaho.gov (208) 287-2803
Eric Stark Idaho Department of Fish and Game (IDFG) No Interested Party eric.stark@idfg.idaho.gov (208) 854-8920
Craig Steele Pacific States Marine Fisheries Commission Yes Interested Party craig.steele@idfg.idaho.gov (208) 939-6713
David Venditti Idaho Department of Fish and Game (IDFG) No Interested Party david.venditti@idfg.idaho.gov (208) 465-8404x231


Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Environmental Compliance Documentation B: 165. Environmental Complicance Documentation 07/03/2020 07/03/2020
Effective implementation management and timely contract administration C: 119. Obj. 1-4, Manage/Adminster Projects 06/30/2021 06/24/2021
Completed Annual Report D: 132. Obj. 1-4 Submit Progress Report for the period (01/2020) to (12/2020) 03/30/2021 03/30/2021
Communication with agencies E: 189. Obj. 1, Sampling Coordination among agencies 06/30/2021 06/24/2021
Collect tissue samples from all hatchery broodstock F: 157. Obj. 1, Collect tissue samples from hatchery broodstock (Chinook SY2020 and Steelhead SY2021) 06/30/2021 06/24/2021
Inventoried genetic tissue samples G: 157. Obj. 1, Inventory and label all tissues samples 06/30/2021 06/24/2021
Table summarizing total broodstock sampled H: 161. Obj. 1, Summarizing broodstock numbers and sampling information 06/30/2021 06/24/2021
Multi-locus SNP genotypes I: 157. Obj. 2, SNP Genotyping (broodstock)-CRITFC 06/30/2021 06/24/2021
Multi-locus SNP genotypes J: 157. Obj. 2, SNP Genotyping (broodstock)-IDFG 06/30/2021 06/24/2021
Report/Present Genetic Data K: 161. Obj. 2, Genotypes and allele frequencies 06/30/2021 06/24/2021
Analyze Genetic Data L: 162. Obj. 2, Population diversity and differentiation in baseline 06/30/2021 06/24/2021
Upload genotypes to database M: 159. Obj. 2, Baseline genotypes to database 06/30/2021 06/24/2021
Communication and Coordination with agencies N: 156. Obj. 3 Organize back-end projects utilizing PBT 06/30/2021 06/24/2021
Multi-locus SNP genotypes O: 157. Obj. 3, Genotyping (Backend sampling) 06/30/2021 06/24/2021
PBT assignments P: 162. Obj. 3, Parentage Assignments (Backend sampling) 06/30/2021 06/24/2021
Report/Present Genetic Data Q: 161. Obj. 3, Parentage Results and stock/cohort reporting (Backend sampling) 06/30/2021 06/24/2021
Develop sampling plans R: 156. Obj. 4, Develop RM&E Methods and Designs (integrated evaluations) 06/30/2021 06/24/2021
Genetic samples collected S: 157. Obj. 4, Conduct and assist with adult, carcass and juvenile sampling (integrated evaluations) 06/30/2021 06/24/2021
Inventory all Chinook Salmon samples collected in 2020/2021 T: 157. Obj. 4, Inventory and label tissue samples (integrated evaluations) 06/30/2021 06/24/2021
Produce accessible, error-checked datasets U: 157. Obj. 4, Sample genotyping (integrated evaluations) 06/30/2021 06/24/2021
Parentage assignment V: 162. Obj. 4, Parentage Assignments (integrated evaluations) 06/30/2021 06/24/2021
Report/Present Genetic Data W: 161. Obj. 4, Parentage results and reproductive success (integrated evaluations) 06/30/2021 06/24/2021

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 1 instance of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 8 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 4 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 3 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA
B 165 Environmental Complicance Documentation
C 119 Obj. 1-4, Manage/Adminster Projects
D 132 Obj. 1-4 Submit Progress Report for the period (01/2020) to (12/2020)
E 189 Obj. 1, Sampling Coordination among agencies
F 157 Obj. 1, Collect tissue samples from hatchery broodstock (Chinook SY2020 and Steelhead SY2021) 07/01/2020
G 157 Obj. 1, Inventory and label all tissues samples 07/01/2020
H 161 Obj. 1, Summarizing broodstock numbers and sampling information
I 157 Obj. 2, SNP Genotyping (broodstock)-CRITFC 07/01/2020
J 157 Obj. 2, SNP Genotyping (broodstock)-IDFG 07/01/2020
K 161 Obj. 2, Genotypes and allele frequencies
L 162 Obj. 2, Population diversity and differentiation in baseline
M 159 Obj. 2, Baseline genotypes to database
N 156 Obj. 3 Organize back-end projects utilizing PBT 07/01/2020
O 157 Obj. 3, Genotyping (Backend sampling) 07/01/2020
P 162 Obj. 3, Parentage Assignments (Backend sampling)
Q 161 Obj. 3, Parentage Results and stock/cohort reporting (Backend sampling)
R 156 Obj. 4, Develop RM&E Methods and Designs (integrated evaluations) 07/01/2020
S 157 Obj. 4, Conduct and assist with adult, carcass and juvenile sampling (integrated evaluations) 07/01/2020
T 157 Obj. 4, Inventory and label tissue samples (integrated evaluations) 07/01/2020
U 157 Obj. 4, Sample genotyping (integrated evaluations) 07/01/2020
V 162 Obj. 4, Parentage Assignments (integrated evaluations)
W 161 Obj. 4, Parentage results and reproductive success (integrated evaluations)