Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 88216: 2010-031-00 EXP IDFG EXP SNAKE RIVER CHINOOK AND STEELHEAD
Project Number:
Title:
IDFG Genetic Monitoring of Snake River Steelhead & Chinook Salmon
BPA PM:
Stage:
Implementation
Area:
Province Subbasin %
Blue Mountain Grande Ronde 20.00%
Imnaha 20.00%
Columbia Plateau Snake Lower 20.00%
Mountain Snake Clearwater 20.00%
Salmon 20.00%
Contract Number:
88216
Contract Title:
2010-031-00 EXP IDFG EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Continuation:
Previous: Next:
85312: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
  • 90544: 2010-031-00 EXP SNAKE RIVER CHINOOK AND STEELHEAD
Contract Status:
Closed
Contract Description:
Since 2010, this project has implemented a genetic technology for tagging hatchery steelhead and Chinook salmon in the Snake River basin, referred to as Parentage Based Tagging (PBT).  PBT provides a powerful tool to meet Fish & Wildlife Program objectives associated with tagging hatchery stocks, evaluating integrated and segregated hatchery programs, and enforcing salmonid fishery management measures. This project genotypes approximately 20,000  samples annually to create PBT parental genetic baselines for hatchery steelhead and Chinook salmon in the Snake River basin.  This includes ~1,500 Fall Chinook salmon from the Lyons Ferry Fish hatchery. In doing so, it effectively, permanently genetically marks ~12 million smolts, per species, per year. This project works closely with an existing BPA funded project (2008-907-00) to ensure that genetic marker sets used in the Columbia River basin are standardized, providing unprecedented genetic tools for managing wild and hatchery stocks in the basin: with Genetic Stock Identification techniques segregating adult wild runs by stock of origin, and Parentage Based Tagging technologies identifying the stock and age of sampled hatchery fish. Importantly, a significant portion of hatchery adults that return to the Columbia River Basin each year are unmarked/untagged using conventional tagging methods (e.g. adipose clips, CWT, PIT).  Implementation of sampling and genotyping programs at Bonneville and Lower Granite Dams allow the identification of these unmarked/untagged hatchery fish and significantly improve estimates of wild escapement.
Account Type(s):
Expense
Contract Start Date:
07/01/2021
Contract End Date:
06/30/2022
Current Contract Value:
$1,603,687
Expenditures:
$1,603,687

* Expenditures data includes accruals and are based on data through 31-Mar-2024.

BPA CO:
BPA COR:
Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Coop
Pricing Method:
Cost Reimbursement (CNF)
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Full Name Organization Write Permission Contact Role Email Work Phone
Daniel Affonso Bonneville Power Administration Yes Contracting Officer dxaffonso@bpa.gov (503) 230-3893
Martin Allen Bonneville Power Administration Yes COR mballen@bpa.gov (503) 230-5115
Matthew Campbell Idaho Department of Fish and Game (IDFG) Yes Contract Manager matthew.campbell@idfg.idaho.gov (208) 939-6713
Israel Duran Bonneville Power Administration Yes Env. Compliance Lead induran@bpa.gov (503) 230-3967
Paul Kline Idaho Department of Fish and Game (IDFG) No Interested Party paul.kline@idfg.idaho.gov (208) 287-2788
Christine Kozfkay Idaho Department of Fish and Game (IDFG) No Supervisor christine.kozfkay@idfg.idaho.gov (208) 287-2789
Peter Lofy Bonneville Power Administration Yes F&W Approver ptlofy@bpa.gov (503) 230-4193
Jennifer McKenna Bonneville Power Administration No CO Assistant jmmckenna@bpa.gov (503) 314-8915
Shawn Narum Columbia River Inter-Tribal Fish Commission (CRITFC) No Interested Party nars@critfc.org (208) 837-9096x1120
William Schrader Idaho Department of Fish and Game (IDFG) No Interested Party bill.schrader@idfg.idaho.gov (208) 465-8404x235
Susan Smith Idaho Department of Fish and Game (IDFG) No Administrative Contact susan.smith@idfg.idaho.gov (208) 287-2803
Craig Steele Pacific States Marine Fisheries Commission Yes Technical Contact craig.steele@idfg.idaho.gov (208) 939-6713
David Venditti Idaho Department of Fish and Game (IDFG) No Technical Contact david.venditti@idfg.idaho.gov (208) 465-8404x231


Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Environmental Compliance Documentation A: 165. Environmental Complicance Documentation 07/03/2021 07/03/2021
Effective implementation management and timely contract administration B: 119. Obj. 1-8, Manage/Administer Projects 06/30/2022 06/24/2022
Completed Annual Report D: 132. Obj. 1-8, Submit Progress Report for the period (1/1/2021) to (12/31/2021) 05/31/2022 05/27/2022
Communication with agencies E: 189. OBJ 1: Evaluate and maintain SNPS 06/30/2022 06/24/2022
Genetic marker discovery F: 157. OBJ 1: Evaluate and maintain SNPS 06/30/2022 06/24/2022
Evaluate and maintain SNPs G: 161. OBJ 1: Evaluate and maintain SNPs 06/30/2022 06/24/2022
OBJ 2: GSI Baseline maintenance and expansion H: 156. OBJ 2: GSI Baseline maintenance and expansion 06/30/2022 06/24/2022
OBJ 2: GSI Baseline maintenance and expansion I: 162. OBJ 2: GSI Baseline maintenance and expansion 06/30/2022 06/24/2022
GSI Baseline maintenance and expansion J: 161. OBJ 2: GSI Baseline maintenance and expansion 06/30/2022 06/24/2022
Upload genotypes to database K: 159. OBJ 2: GSI Baseline maintenance and expansion 06/30/2022 06/24/2022
All hatcheries contacted and sampling plans finalized L: 189. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Inventoried genetic tissue samples M: 157. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Multi-locus SNP genotypes N: 157. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Report/Present Genetic Data O: 161. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Multi-locus SNP genotypes P: 157. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Report/Present Genetic Data Q: 161. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Analyze Genetic Data R: 162. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Baseline genotypes to database S: 159. OBJ 3: PBT Baseline maintenance 06/30/2022 06/24/2022
Sampling and logistics T: 156. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
Sample Inventory U: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
Sample Genotyping V: 157. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
Lower Granite Dam wild and hatchery stock monitoring W: 159. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
GSI Assignments X: 162. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
Lower Granite Dam wild and hatchery stock monitoring Y: 161. OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 06/30/2022 06/24/2022
Sampling and logistics Z: 156. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
Sample inventory AA: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
Genotyping AB: 157. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
Transfer Genotypes to Regional Genetic Data Repository AC: 159. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
GSI and PBT assignments AD: 162. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
Stock composition AE: 161. OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 06/30/2022 06/24/2022
Develop RM&E Methods and Designs AF: 156. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
Genetic sampling AG: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
Sample inventory AH: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
Sample genotyping AI: 157. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
PBT assignments AJ: 162. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
Parentage results and reproductive success AK: 161. OBJ 6: Integrated Hatchery Monitoring 06/30/2022 06/24/2022
RM&E Methods and Designs AL: 156. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2022 06/24/2022
Deliverable: Population genetics AM: 162. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2022 06/24/2022
Estimate diversity AN: 161. OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 06/30/2022 06/24/2022
Modeling and data analysis AO: 156. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/30/2022 06/24/2022
Publish peer-reviewed journal articile AP: 183. OBJ 8. Developing Grandparentage Technology in the Snake River Basin 06/30/2022 06/24/2022

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (O. tshawytscha) - Snake River Fall ESU (Threatened)
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer ESU (Threatened)
  • 10 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 7 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 5 instances of WE 162 Analyze/Interpret Data
Chinook (O. tshawytscha) - Snake River Spring/Summer (not listed)
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 3 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 3 instances of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 1 instance of WE 161 Disseminate Raw/Summary Data and Results
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (O. mykiss) - Snake River DPS (Threatened)
  • 1 instance of WE 183 Produce Journal Article
  • 5 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 159 Transfer/Consolidate Regionally Standardized Data
  • 5 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 4 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 165 Environmental Complicance Documentation
B 119 Obj. 1-8, Manage/Administer Projects
C 185 Obj. 1-8, Periodic Status Reports for BPA
D 132 Obj. 1-8, Submit Progress Report for the period (1/1/2021) to (12/31/2021)
E 189 OBJ 1: Evaluate and maintain SNPS
F 157 OBJ 1: Evaluate and maintain SNPS 07/01/2021
G 161 OBJ 1: Evaluate and maintain SNPs
H 156 OBJ 2: GSI Baseline maintenance and expansion 07/01/2021
I 162 OBJ 2: GSI Baseline maintenance and expansion
J 161 OBJ 2: GSI Baseline maintenance and expansion
K 159 OBJ 2: GSI Baseline maintenance and expansion
L 189 OBJ 3: PBT Baseline maintenance
M 157 OBJ 3: PBT Baseline maintenance 07/01/2021
N 157 OBJ 3: PBT Baseline maintenance 07/01/2021
O 161 OBJ 3: PBT Baseline maintenance
P 157 OBJ 3: PBT Baseline maintenance 07/01/2021
Q 161 OBJ 3: PBT Baseline maintenance
R 162 OBJ 3: PBT Baseline maintenance
S 159 OBJ 3: PBT Baseline maintenance
T 156 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2021
U 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2021
V 157 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring 07/01/2021
W 159 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
X 162 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Y 161 OBJ 4. Lower Granite Dam wild and hatchery stock monitoring
Z 156 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2021
AA 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2021
AB 157 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries 07/01/2021
AC 159 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AD 162 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AE 161 OBJ 5. Steelhead stock composition in the Columbia and Snake River Tribal and Sport Fisheries
AF 156 OBJ 6: Integrated Hatchery Monitoring 07/01/2021
AG 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2021
AH 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2021
AI 157 OBJ 6: Integrated Hatchery Monitoring 07/01/2021
AJ 162 OBJ 6: Integrated Hatchery Monitoring
AK 161 OBJ 6: Integrated Hatchery Monitoring
AL 156 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array 07/01/2021
AM 162 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AN 161 OBJ 7. Genetic diversity and life history characteristics of adults detected at PIT tag array
AO 156 OBJ 8. Developing Grandparentage Technology in the Snake River Basin 07/01/2021
AP 183 OBJ 8. Developing Grandparentage Technology in the Snake River Basin