P.O. Box 3621
Portland, OR  97208-3621

State Project 31001
BPA Project 199500400
Contract Number 00006294
Project 95-04-00
Mitigation for the Construction and Operation of Libby Dam

Subbasin.  
Kootenai River Subbasin originates in British Columbia, Canada, and extends south into Montana and Idaho, USA. Work will primarily be conducted upstream and downstream of Libby Dam.  This includes all the major sub-drainages connected to Libby Reservoir and the Kootenai River above Lake Koocanusa and downstream of Libby Dam to the Idaho border.  

PROJECT BACKGROUND

Fisheries losses caused by the construction and operation of Libby Dam, site-specific mitigation actions and monitoring strategies were documented in the Libby Dam Fisheries Mitigation and Implementation Plan (MFWP et al. 1998).  As directed by the Northwest Power and Conservation Council's (NPCC) Fish and Wildlife Program (NPCC 1994), the  Mitigation Plan and Kootenai Subbasin documents present actions needed to offset fisheries losses associated with the construction and operatio of Libby Dam. These documents were developed collaboratively with the Confederated Salish and Kootenai Tribes (CSKT) and the Kootenai Tribe of Idaho (KTOI).  Mitigation actions are also coordinated with the Idaho Department of Fish and Game (IDFG) and British Columbia Ministries.

This program implements the NPCC Plan to enhance hydropower-affected fish stocks in the Montana portion of the Kootenai Watershed.  Fish restoration efforts in this workplan are consistent with the White Sturgeon Recovery Plan (USFWS 1997) and 2000 Biological Opinion (BiOp) on the operation of the Federal Columbia River Power System (FCRPS).  Kootenai River white sturgeon (Acipenser transmontanus) are endangered (USFWS 1997); less than 600 individuals remain. Bull trout (Salvelinus confluentus) are listed as threatened under ESA, and populations in the Kootenai River were fragmented by Libby Dam. The abundance and distribution of westslope cutthroat trout (Oncorhyncus clarki lewisi) and redband trout (O. mykiss) in the Kootenai Basin have  declined from their historic condition due to dam construction and operation, negative interactions with nonnative species (e.g. predation, competition, genetic introgression), and anthropogenic factors (e.g. channel alterations and sedimentation). Hybridization and competition with non-native fish species and habitat degradation pose the greatest threat to westslope cutthroat trout.   This work plan implements and evaluates on-the-ground habitat enhancement efforts that alleviate limiting factors to native species populations. Projects reclaiming critical spawning, rearing, and over-wintering habitats have been completed, or are ongoing.  These projects are being completed with the help of grassroots watershed workgroups comprised of landowners, agencies, sportsmen's groups and local, state and federal government coalitions.

Project history  

This project combines the former projects 83-465-00, 83-467-00 and 94-010-00 for efficiency and cost savings.  Work on Libby Reservoir to assess the effects of operation on fish populations and lower trophic levels began in 1982.  This project established relationship between reservoir operation and biological productivity, and incorporated the results in the computer model LRMOD.  The models and preliminary IRCs (originally called Biological Rule Curves) were first published in 1989 (Fraley et al. 1989), then refined in 1996 (Marotz et al. 1996 and 1999).  Integrated Rule Curves (IRCs) were adopted by NPPC in 1994, but were superceded by operations called for by the NMFS 1995 Biological Opinion and have not yet been implemented.  The project also developed a tiered approach for white sturgeon spawning flows balanced with reservoir IRCs and Snake River salmon biological opinion, a strategy adopted by the White Sturgeon Recovery Team in their Recovery Plan (USFWS 1999) and the USFWS 2000 BiOp. Sturgeon flow targets at Bonners Ferry, ID were since converted by ACOE and USFWS to specified volumes to be released from Libby Dam.  
A long-term database was established for monitoring populations of kokanee, bull trout, westslope cutthroat trout, rainbow trout, burbot and other native fish species.  Long-term monitoring programs of zooplankton and trophic relationships were similarly established.  A model was calibrated to estimate the entrainment of fish and zooplankton through Libby Dam as related to hydro-operations and use of the selective withdrawal structure. Research on the entrainment of fish through the Libby Dam penstocks began in 1990, and results were published in 1996 (Skaar et al. 1996). Assessment of the effects of river fluctuations on Kootenai River burbot fishery was examined in 1994 and 1995. The effects of dam operation on benthic macroinvertebrates in the Kootenai River was also assessed (Hauer and Stanford 1997) for comparison with conditions measured in the past (Perry and Huston 1983).  This study will be replicated in 2005.  The Libby Project has also identified important spawning and rearing tributaries in the U.S. portion of the reservoir and began genetic inventories of species of special concern. Research on the effects of operations on the river fishery using IFIM techniques was initiated in 1992. The results of this study were recently finalized and upgraded with the incorporation of GIS technology. The final result was a model capable of graphically and numerically quantifying weighted usable area for juvenile and adult rainbow trout and bull trout in the Kootenai River for a wide range of discharges.

Scientific Framework

We have designed our program to address fisheries issues in varying levels of scope, descending from basin-wide, over-arching mitigation requirements to site-specific actions.  Mitigation projects are selected and prioritized based on our rationale and decision pathway described within this document.  The scientific framework addresses varying levels of scope, progressing from basin-wide issues toward site-specific details. Each level is addressed by individual mitigation actions. Our first priority is to prevent impacts that can reduce the overall health of the subbasin.  Basin-wide issues include federal and private dam operations and the prevention or containment of invasive aquatic nuisance species. Onsite mitigation addresses habitat degradation, fish passage barriers, genetic introgression with pure native fish stocks and negative interactions between native and nonnative fish species. Offsite mitigation presents opportunities to create genetic reserves to conserve native species and to increase angling opportunities.

Modifications to dam operation are a basin-wide mitigation requirement because of the far-reaching influence of dam operation on environmental conditions in the reservoirs and rivers throughout the Columbia River basin. Montana has actively pursued a basin-wide operating strategy beneficial to imperiled fish stocks in the Columbia River headwaters, as well as the lower river. In the Libby Mitigation Plan, we estimated that approximately half of the losses identified within the loss statement (MFWP, CSKT and KTOI 1998) could be mitigated by modifying dam operation.  Much of the remaining losses can be mitigated using techniques that do not require changes in reservoir or river management.  

Although the current Statement of Work does not include any specific work activities directed at modifying dam operation, this project has a lengthy history of efforts directed toward that goal, and is expected to continue these efforts in the future.  This mitigation program has developed quantitative biological models to assess the biological consequences of various dam operation strategies on the reservoir biota.  Model simulations were used to develop integrated rule curves (IRCs) for the operation of Hungry Horse and Libby Dams (Marotz et al. 1996 and 1999). The Northwest Power Planning Council adopted the IRCs in 1995 (NWPPC 1995).  A system flood control strategy developed using the reservoir model (LRMOD) was useful to the Army Corps of Engineers (ACOE) in developing their new variable flow, flood control strategy called VARQ (ACOE 1999).  The ACOE is currently producing environmental documents (EIS) on the permanent implementation of VARQ at Libby Dam, while VARQ is currently implemented on an interim basis.  The 2000 Biological Opinions (BiOp) on the operation of the Federal Columbia River Power System (FCRPS) by both the National Marine Fisheries Service (NMFS 2000 and US Fish and Wildlife Service (USFWS 2006) support the use of VARQ at Libby Dam.  The endangered Kootenai white sturgeon Recovery Team also adopted the IRC/VARQ operation in the white sturgeon recovery plan (USFWS 1999). Furthermore, the Northwest Power and Conservation Council's mainstem amendments were recently adopted for the Libby and Hungry Horse Projects that will implement new drafting limits for these two reservoirs and reduce flow variation from these projects during the summer months.  Montana FWP has initiated a research project to quantify the biological effects of the proposed change in operations at the level of local fish populations (BPA Project # 200600800).  

The overall goal of the Libby Mitigation Project is to correct effects caused by the Federal hydropower operations and mitigate for fisheries losses attributed to the construction and operation of Libby Dam using watershed-based, habitat enhancement, fish passage improvements, and offsite fisheries habitat improvement measures. The Libby Mitigation Project's work elements for the current funding cycle have been organized around the following five objectives.  
Objective 1:  Restore, enhance, or protect and maintain existing sustainable native fish populations and their habitat in the Kootenai Basin in order to mitigate for losses attributable to the construction and operation of Libby Dam.

Objective 2:  Monitor and evaluate the efficacy of previously completed restoration/mitigation projects.    
        
Objective 3:  Collect, analyze and interpret spatial distribution, seasonal ovement, population trend, and growth data, absolute and relative abundance  indices, and genetic and life history information information needed for the conservation and recovery of native resident fish species including the endangered Kootenai River white sturgeon, threatened bull trout, westslope cutthroat trout, interior redband rainbow trout, and burbot, as outlined in the Libby Mitigation and Implementation Plan (MFWP et al. 1998) and Kootenai Subbasin Plan.

Objective 4:  Investigate the factors limiting the production and recruitment of salmonid populations in the lower Kootenai River (Kootenai Falls to Idaho border). This is a collarborative project between the KTOI, IDFG and MFWP.  The Montana section of the Kootenai River will serve as a control for Idaho's fertilization project.  All collaborators identified this section of the river to best serve this purpose.  

Objective 5:  Summarize, evaluate, analyze, discuss and disseminate information gathered during project activities in a scientific format.