Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 53211: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Project Number:
Title:
Influence of Environment and Landscape on Salmonid Genetics
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
53211
Contract Title:
2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Continuation:
Previous: Next:
49304: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
  • 57760: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Status:
History
Contract Description:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids.  This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives:

1) Landscape Genetics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook salmon and steelhead populations.

2) Expression of Traits - test for association of SNPs and gene expression results with traits of interest (i.e., smoltification, thermal tolerance, disease resistance, run timing) that are related to recovery of steelhead populations.  Evaluate candidate genes in a broad range of populations to quantify adaptive variation and local adaptation.
Account Type(s):
Expense
Contract Start Date:
07/01/2011
Contract End Date:
06/30/2012
Current Contract Value:
$95,130
Expenditures:
$95,130

* Expenditures data includes accruals and are based on data through 30-Sep-2021.

Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Funding Package - Submit draft to COTR B: 119. Obj. 1 & 2) Project Management 07/08/2011 04/26/2011
Environmental Compliance C: 165. Obj. 1 & 2) EC 07/01/2011 07/01/2011
Manuscript D: 183. Obj. 1 & 2) Publications 06/25/2012 06/29/2012
List of Landscape and Genetic Variables E: 156. Obj. 1) Determine Landscape and Genetic Variables 03/30/2012 03/30/2012
Genotypes and Environmental/Landscape Data collected F: 157. Obj. 1) Gather Landscape and Genetic Data 03/28/2012 03/28/2012
Statistical Analyses G: 162. Obj. 1) Landscape Genetics Analyses/Correlation 04/30/2012 04/30/2012
Report Results H: 161. Obj. 1) Distribute Results 06/15/2012 06/29/2012
Plan for analysis I: 156. Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 01/31/2012 01/31/2012
Inventory Tissue Samples J: 157. Obj. 2) Tissue Sampling 04/06/2012 04/06/2012
Allele Frequencies and Gene expression K: 157. Obj. 2) Quantify Gene Expression & SNP Frequencies 05/31/2012 05/31/2012
Analyzed Data: Association of SNPs and Gene Expression L: 162. Obj. 2) Genes Associated with Traits 05/31/2012 05/31/2012
Report Results M: 161. Obj. 2) Distribute Results 06/29/2012 06/29/2012
Attach Progress Report in Pisces N: 132. Obj. 1 & 2) Submit Progress Report for the period (May 2010) to (April 2011) 06/30/2012 06/29/2012

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Trout, Interior Redband (O. mykiss gairdnerii)
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2011
B 119 Obj. 1 & 2) Project Management 07/01/2011
C 165 Obj. 1 & 2) EC 07/01/2011
D 183 Obj. 1 & 2) Publications 07/01/2011
E 156 Obj. 1) Determine Landscape and Genetic Variables 07/01/2011
F 157 Obj. 1) Gather Landscape and Genetic Data 07/01/2011
G 162 Obj. 1) Landscape Genetics Analyses/Correlation 07/01/2011
H 161 Obj. 1) Distribute Results 07/01/2011
I 156 Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 07/01/2011
J 157 Obj. 2) Tissue Sampling 07/01/2011
K 157 Obj. 2) Quantify Gene Expression & SNP Frequencies 07/01/2011
L 162 Obj. 2) Genes Associated with Traits 07/01/2011
M 161 Obj. 2) Distribute Results 07/01/2011
N 132 Obj. 1 & 2) Submit Progress Report for the period (May 2010) to (April 2011) 07/01/2011