Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
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Project Summary

Project 2009-005-00 - Influence of Environment and Landscape on Salmonid Genetics

Please Note: This project is the product of one or more merges and/or splits from other projects. Historical data automatically included here are limited to the current project and previous generation (the “parent” projects) only. The Project Relationships section details the nature of the relationships between this project and the previous generation. To learn about the complete ancestry of this project, please review the Project Relationships section on the Project Summary page of each parent project.

Project Number:
2009-005-00
Title:
Influence of Environment and Landscape on Salmonid Genetics
Summary:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids. This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives: 1) Landscape Genetics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook salmon and steelhead populations; and 2) Expression of Traits - evaluate how environmental conditions influence the genetic expression of physiological traits (i.e., smoltification and thermal tolerance) that are related to recovery of steelhead populations. This information will facilitate understanding of adaptation of natural populations of salmonids to their environment. We expect this to benefit future management/recovery of natural and supplemented populations, along with reintroduction programs. The work related to objective 1 (Landscape Genetics) will be completed by CRITFC and University of Idaho (UI) staff at the Hagerman Fish Culture Experiment Station. Tissue samples for objective 2 (Expression of Traits) will be collected and analyzed by CRITFC and UI staff in Hagerman. Geneticists with CRITFC have adequate expertise to complete these objectives, and have published related peer-reviewed papers (Narum et al. 2008, Campbell et al. 2008).
Proposer:
Proponent Orgs:
Columbia River Inter-Tribal Fish Commission (CRITFC) (Tribe)
Starting FY:
2008
Ending FY:
2032
BPA PM:
Stage:
Area:
Province Subbasin %
Basinwide - 100.00%
Purpose:
Programmatic
Emphasis:
RM and E
Focal Species:
Chinook - All Populations
Sockeye - All Populations
Steelhead - All Populations
Trout, Interior Redband
Trout, Rainbow
Species Benefit:
Anadromous: 100.0%   Resident: 0.0%   Wildlife: 0.0%
Special:
None

No photos have been uploaded yet for this Project.

Summary of Budgets

To view all expenditures for all fiscal years, click "Project Exp. by FY"

To see more detailed project budget information, please visit the "Project Budget" page

Decided Budget Transfers  (FY2020 - FY2022)

Acct FY Acct Type Amount Fund Budget Decision Date
FY2020 Expense $152,863 From: Fish Accord - LRT - CRITFC Accord Extensions (CRITFC) 10/4/2018 10/04/2018
FY2020 Expense $152,863 To: Fish Accord - LRT - CRITFC CRITFC Combination (2008-504-00, 2009-005-00, 2008-907-00) 2/13/19 02/13/2019
FY2021 Expense $154,774 From: Fish Accord - LRT - CRITFC Accord Extensions (CRITFC) 10/4/2018 10/04/2018
FY2021 Expense $154,774 To: Fish Accord - LRT - CRITFC CRITFC Combination (2008-504-00, 2009-005-00, 2008-907-00) 2/13/19 02/13/2019
FY2022 Expense $154,774 From: Fish Accord - LRT - CRITFC Accord Extensions (CRITFC) 10/4/2018 10/04/2018
FY2022 Expense $154,774 To: Fish Accord - LRT - CRITFC CRITFC Combination (2008-504-00, 2009-005-00, 2008-907-00) 2/13/19 02/13/2019

Pending Budget Decision?  No


Actual Project Cost Share

Current Fiscal Year — 2021
Cost Share Partner Total Proposed Contribution Total Confirmed Contribution
There are no project cost share contributions to show.
Previous Fiscal Years
Fiscal Year Total Contributions % of Budget
2020 (Draft)
2019
2018
2017
2016
2015
2014
2013
2012
2011

Contracts

The table below contains contracts with the following statuses: Active, Closed, Complete, History, Issued.
* "Total Contracted Amount" column includes contracted amount from both capital and expense components of the contract.
Expense Contracts:
Number Contractor Name Title Status Total Contracted Amount Dates
43268 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 200900500 EXP LANDSCAPE GENETICS&EXPRESSION TRAITS History $288,601 7/1/2009 - 6/30/2010
49304 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $146,768 7/1/2010 - 6/30/2011
53211 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $95,130 7/1/2011 - 6/30/2012
57760 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $159,802 7/1/2012 - 6/30/2013
61839 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $257,687 7/1/2013 - 6/30/2014
65575 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $173,779 7/1/2014 - 6/30/2015
69549 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $203,078 7/1/2015 - 6/30/2016
73070 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $193,385 7/1/2016 - 6/30/2017
76573 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $163,874 7/1/2017 - 6/30/2018
73354 REL 9 SOW Columbia River Inter-Tribal Fish Commission (CRITFC) 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION History $134,494 7/1/2018 - 3/31/2019



Annual Progress Reports
Expected (since FY2004):10
Completed:9
On time:9
Status Reports
Completed:39
On time:29
Avg Days Early:4

Earliest Subsequent           Accepted Count of Contract Deliverables
Contract Contract(s) Title Contractor Start End Status Reports Complete Green Yellow Red Total % Green and Complete Canceled
43268 49304, 53211, 57760, 61839, 65575, 69549, 73070, 76573, 73354 REL 9 200900500 EXP LANDSCAPE GENETICS&EXPRESSION TRAITS Columbia River Inter-Tribal Fish Commission (CRITFC) 07/2009 07/2009 History 39 114 10 0 4 128 96.88% 0
Project Totals 39 114 10 0 4 128 96.88% 0


The table content is updated frequently and thus contains more recent information than what was in the original proposal reviewed by ISRP and Council.

Review: 2018 Research Project Status Review

Council Recommendation

Assessment Number: 2009-005-00-NPCC-20210302
Project: 2009-005-00 - Influence of Environment and Landscape on Salmonid Genetics
Review: 2018 Research Project Status Review
Approved Date: 12/20/2018
Recommendation: Implement
Comments: Recommendation: This project to be reviewed as part of the 2021 Anadromous Habitat and Hatchery Review. Consider ISRP comments in proposal as appropriate. See programmatic issue on Fish Propagation.
Review: Fish Accord ISRP Review

Independent Scientific Review Panel Assessment

Assessment Number: 2009-005-00-ISRP-20100323
Project: 2009-005-00 - Influence of Environment and Landscape on Salmonid Genetics
Review: Fish Accord ISRP Review
Completed Date: None
First Round ISRP Date: 12/12/2008
First Round ISRP Rating: Response Requested
First Round ISRP Comment:
The proposal is insufficient for technical review. The landscape genetics and QTL investigations have the potential to be useful contributions to understanding how and why the diverse life-history variation in Chinook salmon and steelhead/resident rainbow trout is distributed in the Columbia River Basin. This information could lead to improved planning in the face of climate change and human population growth. This, however, is an omnibus proposal, with two distinct parts. It is not clear how they fit together. The proposal should be rewritten to address the criticisms identified below in the ISRP Comments.
Documentation Links:
Review: RME / AP Category Review

Council Recommendation

Assessment Number: 2009-005-00-NPCC-20110422
Project: 2009-005-00 - Influence of Environment and Landscape on Salmonid Genetics
Review: RME / AP Category Review
Proposal: RMECAT-2009-005-00
Proposal State: Pending BPA Response
Approved Date: 6/10/2011
Recommendation: Fund (Qualified)
Comments: Implement through 2014 per January 12, 2011 Council decision. Implementation beyond 2014 based on ISRP and Council review of the results report and recommendation of future work.
Conditions:
Council Condition #1 Programmatic Issue: RMECAT #6 Research projects in general—.

2008 FCRPS BiOp Workgroup Assessment

Assessment Number: 2009-005-00-BIOP-20101105
Project Number: 2009-005-00
Review: RME / AP Category Review
Proposal Number: RMECAT-2009-005-00
Completed Date: None
2008 FCRPS BiOp Workgroup Rating: Response Requested
Comments: BiOp Workgroup Comments: Please identify:
1. Why your data is "not electronically available"; and
2. What data sets will not be "electronically available" for various deliverables. Please specify the deliverable that is not electronically available. (Note a data set includes the raw data collected and additional data on analysis). For example if there is a deliverable for population adult abundance or habitat, we expect your raw and synthesized data to be made available electronically.
- Your response may help BPA identify funding needs for data repositories or identify an existing data warehouse that your data could be stored.

The BiOp RM&E Workgroups made the following determinations regarding the proposal's ability or need to support BiOp Research, Monitoring and Evaluation (RME) RPAs. If you have questions regarding these RPA association conclusions, please contact your BPA COTR and they will help clarify, or they will arrange further discussion with the appropriate RM&E Workgroup Leads. BiOp RPA associations for the proposed work are: (0)
All Questionable RPA Associations (0) and
All Deleted RPA Associations (0)
Proponent Response:

Responses:

1. Previously generated genotype data are already available in shared databases known as GAPS and SPAN.  New genotype data can be made available if a public database is identified.  When possible, new baseline genotype data will be submitted to GAPS and SPAN databases.  Also, genotype data that is part of publications for this project will be submitted to the "Dryad" database.  Dryad is an international repository of data underlying peer-reviewed articles in the basic and applied biosciences at http://datadryad.org

2. There is currently no public database for gene expression data that may be generated in this study.  However, we will attempt to submit published data to Dryad.


Project Relationships: This project Merged From 2008-519-00 effective on 11/20/2008
Relationship Description: Per discussion with CRITFC & BPA, combining projects 2008-519-00 (and 2008-521-00) into 2009-005-00 in order to reduce work, add efficiencies, etc.

This project Merged From 2008-521-00 effective on 11/20/2008
Relationship Description: Per discussion with CRITFC & BPA, combining projects 2008-521-00 (and 2008-519-00) into 2009-005-00 in order to reduce work, add efficiencies, etc.

This project Merged To 2008-907-00 effective on 2/13/2019
Relationship Description: Starting with FY19 contracts, projects 2008-504-00 & 2009-005-00 are merged into project 2008-907-00


Name Role Organization
Christine Golightly Interested Party Columbia River Inter-Tribal Fish Commission (CRITFC)
Shawn Narum Project Lead Columbia River Inter-Tribal Fish Commission (CRITFC)
Douglas Hatch Technical Contact Columbia River Inter-Tribal Fish Commission (CRITFC)
Israel Duran Env. Compliance Lead Bonneville Power Administration
Zachary Penney Supervisor Columbia River Inter-Tribal Fish Commission (CRITFC)
Martin Allen Project Manager Bonneville Power Administration
Chris Roe Administrative Contact Columbia River Inter-Tribal Fish Commission (CRITFC)
Jody Lando Project SME Bonneville Power Administration