Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 65575: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Project Number:
Title:
Influence of Environment and Landscape on Salmonid Genetics
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
65575
Contract Title:
2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Continuation:
Previous: Next:
61839: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
  • 69549: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Status:
History
Contract Description:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids.  This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives:

1) Landscape Genetics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook salmon and steelhead populations.

2) Expression of Traits - test for association of SNPs and gene expression results with traits of interest (i.e., smoltification, thermal tolerance, disease resistance, run timing, age-at-maturity) that are related to recovery of steelhead populations.  Evaluate candidate genes in a broad range of populations to quantify adaptive variation and local adaptation.
Account Type(s):
Expense
Contract Start Date:
07/01/2014
Contract End Date:
06/30/2015
Current Contract Value:
$173,779
Expenditures:
$173,779

* Expenditures data includes accruals and are based on data through 30-Sep-2021.

Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
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Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
All administrative tasks fulfilled with timely quality products B: 119. Obj. 1 & 2) Project Management 02/28/2015 02/27/2015
Environmental Compliance C: 165. Obj. 1 & 2) EC 07/01/2014 07/01/2014
Manuscript D: 183. Obj. 1 & 2) Publications 06/30/2015 06/30/2015
List of Landscape and Genetic Variables E: 156. Obj. 1) Determine Landscape and Genetic Variables 10/18/2014 10/18/2014
Genotypes and Environmental/Landscape Data collected F: 157. Obj. 1) Gather Landscape and Genetic Data 04/04/2015 04/03/2015
Statistical Analyses G: 162. Obj. 1) Landscape Genetics Analyses/Correlation 05/30/2015 05/30/2015
Report Results H: 161. Obj. 1) Distribute Results 06/30/2015 06/30/2015
Plan for analysis I: 156. Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 04/30/2015 04/30/2015
Inventory Tissue Samples J: 157. Obj. 2) Tissue Sampling 04/30/2015 04/30/2015
Allele Frequencies and Gene expression K: 157. Obj. 2) Quantify Gene Expression & SNP Frequencies 06/30/2015 06/30/2015
Analyzed Data: Association of SNPs and Gene Expression L: 162. Obj. 2) Genes Associated with Traits 06/30/2015 06/30/2015
Report Results M: 161. Obj. 2) Distribute Results 05/30/2015 03/05/2015
Attach Progress Report in Pisces N: 132. Obj. 1 & 2) Submit Progress Report for the period (July 2013) to (June 2014) 06/30/2015 03/05/2015
BiOp RPA Report O: 141. Other Reports for BPA 03/14/2015 03/05/2015

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Chinook (Oncorhynchus tshawytscha) - All Populations
  • 2 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 1 instance of WE 162 Analyze/Interpret Data
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Trout, Interior Redband (O. mykiss gairdnerii)
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2014
B 119 Obj. 1 & 2) Project Management 07/01/2014
C 165 Obj. 1 & 2) EC 07/01/2014
D 183 Obj. 1 & 2) Publications 07/01/2014
E 156 Obj. 1) Determine Landscape and Genetic Variables 07/01/2014
F 157 Obj. 1) Gather Landscape and Genetic Data 07/01/2014
G 162 Obj. 1) Landscape Genetics Analyses/Correlation 07/01/2014
H 161 Obj. 1) Distribute Results 07/01/2014
I 156 Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 07/01/2014
J 157 Obj. 2) Tissue Sampling 07/01/2014
K 157 Obj. 2) Quantify Gene Expression & SNP Frequencies 07/01/2014
L 162 Obj. 2) Genes Associated with Traits 07/01/2014
M 161 Obj. 2) Distribute Results 07/01/2014
N 132 Obj. 1 & 2) Submit Progress Report for the period (July 2013) to (June 2014) 07/01/2014
O 141 Other Reports for BPA 07/01/2014