Columbia Basin Fish and Wildlife Program Columbia Basin Fish and Wildlife Program
SOW Report
Contract 61839: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Project Number:
Title:
Influence of Environment and Landscape on Salmonid Genetics
BPA PM:
Stage:
Closed
Area:
Province Subbasin %
Basinwide - 100.00%
Contract Number:
61839
Contract Title:
2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Continuation:
Previous: Next:
57760: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
  • 65575: 2009-005-00 EXP LANDSCAPE GENETICS & EXPRESSION
Contract Status:
History
Contract Description:
Environmental and landscape features can greatly contribute to population structure, life history diversification, and adaptation of salmonids.  This proposal combines two projects from the Fish & Wildlife Program Accords with the following objectives:

1) Landscape Genetics - determine correlation of watershed characteristics such as elevation, barriers, migration distance, and temperature to genetic structure of Chinook salmon and steelhead populations.

2) Expression of Traits - test for association of SNPs and gene expression results with traits of interest (i.e., smoltification, thermal tolerance, disease resistance, run timing, age-at-maturity) that are related to recovery of steelhead populations.  Evaluate candidate genes in a broad range of populations to quantify adaptive variation and local adaptation.
Account Type(s):
Expense
Contract Start Date:
07/01/2013
Contract End Date:
06/30/2014
Current Contract Value:
$257,687
Expenditures:
$257,687

* Expenditures data includes accruals and are based on data through 30-Apr-2022.

Env. Compliance Lead:
Work Order Task(s):
Contract Type:
Contract (IGC)
Pricing Method:
Cost Reimbursement (CNF)
Click the map to see this Contract’s location details.

No photos have been uploaded yet for this Contract.

Viewing of Work Statement Elements

Deliverable Title WSE Sort Letter, Number, Title Start End Complete
Fulfill all administrative tasks with quality products and in a timely manner. B: 119. Obj. 1 & 2) Project Management 06/30/2014 06/30/2014
Environmental Compliance C: 165. Obj. 1 & 2) EC 07/01/2013 07/01/2013
Manuscript D: 183. Obj. 1 & 2) Publications 06/30/2014 01/31/2014
List of Landscape and Genetic Variables E: 156. Obj. 1) Determine Landscape and Genetic Variables 10/18/2013 10/18/2013
Genotypes and Environmental/Landscape Data collected F: 157. Obj. 1) Gather Landscape and Genetic Data 04/04/2014 03/31/2014
Statistical Analyses G: 162. Obj. 1) Landscape Genetics Analyses/Correlation 05/30/2014 05/30/2014
Report Results H: 161. Obj. 1) Distribute Results 06/30/2014 06/30/2014
Plan for analysis I: 156. Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 04/04/2014 03/31/2014
Inventory Tissue Samples J: 157. Obj. 2) Tissue Sampling 04/30/2014 04/30/2014
Allele Frequencies and Gene expression K: 157. Obj. 2) Quantify Gene Expression & SNP Frequencies 06/30/2014 06/30/2014
Analyzed Data: Association of SNPs and Gene Expression L: 162. Obj. 2) Genes Associated with Traits 06/30/2014 06/30/2014
Report Results M: 161. Obj. 2) Distribute Results 06/30/2014 06/30/2014
Attach Progress Report in Pisces N: 132. Obj. 1 & 2) Submit Progress Report for the period (July 2013) to (June 2014) 03/15/2014 03/15/2014
BiOp RPA Report O: 141. Obj. 1 & 2) BiOp RPA Report 03/14/2014 03/14/2014

Viewing of Implementation Metrics
Viewing of Environmental Metrics Customize

Primary Focal Species Work Statement Elements
Steelhead (Oncorhynchus mykiss) - All Populations
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data
Trout, Interior Redband (O. mykiss gairdnerii)
  • 1 instance of WE 183 Produce Journal Article
  • 3 instances of WE 157 Collect/Generate/Validate Field and Lab Data
  • 2 instances of WE 161 Disseminate Raw/Summary Data and Results
  • 2 instances of WE 162 Analyze/Interpret Data

Sort WE ID WE Title NEPA NOAA USFWS NHPA Has Provisions Inadvertent Discovery Completed
A 185 Periodic Status Reports for BPA 07/01/2013
B 119 Obj. 1 & 2) Project Management 07/01/2013
C 165 Obj. 1 & 2) EC 07/01/2013
D 183 Obj. 1 & 2) Publications 07/01/2013
E 156 Obj. 1) Determine Landscape and Genetic Variables 07/01/2013
F 157 Obj. 1) Gather Landscape and Genetic Data 07/01/2013
G 162 Obj. 1) Landscape Genetics Analyses/Correlation 07/01/2013
H 161 Obj. 1) Distribute Results 07/01/2013
I 156 Obj. 2) Sampling Plan and Gene Expression/RAD Analysis 07/01/2013
J 157 Obj. 2) Tissue Sampling 07/01/2013
K 157 Obj. 2) Quantify Gene Expression & SNP Frequencies 07/01/2013
L 162 Obj. 2) Genes Associated with Traits 07/01/2013
M 161 Obj. 2) Distribute Results 07/01/2013
N 132 Obj. 1 & 2) Submit Progress Report for the period (July 2013) to (June 2014) 07/01/2013
O 141 Obj. 1 & 2) BiOp RPA Report 07/01/2013